PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G168000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 335aa    MW: 35591 Da    PI: 4.6564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G168000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20150201256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Sobic.006G168000.1.p 150 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 201
                           8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32149209IPR001471AP2/ERF domain
PfamPF008472.3E-14150200IPR001471AP2/ERF domain
PROSITE profilePS5103224.105150208IPR001471AP2/ERF domain
SMARTSM003804.9E-37150214IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23150209IPR016177DNA-binding domain
CDDcd000181.62E-30150209No hitNo description
PRINTSPR003671.7E-13151162IPR001471AP2/ERF domain
PRINTSPR003671.7E-13190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNMDFTGDAD GFALDFIRDL MLGGDGSVPV DSPVVVVSDD VTFPVLPPQP EFQPVSLLPQ  60
QQQHQGYIDI DLTTAECVGA APTAAAVVGE AAAFRAHEPA PPVMIKFGSE PSSPTAMRQP  120
PLTISVPPSS YAWVSSAGMP AAAVEEDFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT  180
YDTPVEAARA YDRAAFRMRG AKAILNFPNE VGTRGADLWA APATASKRRR QQMEGGQDDP  240
EVEVVAVVNK VVKIEAPPPP STQVSSTSPS PVSTPETTAS STVTSATTET GGGAEWLPVT  300
PSSGSSEQYW EALLRDLPPL SPHPALGFPL LSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26149213468ATERF1
3gcc_A3e-26149213468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.11e-148putative AP2/EREBP transcription factor superfamily protein
TrEMBLB4FPJ91e-148B4FPJ9_MAIZE; Uncharacterized protein
TrEMBLK4JFF81e-148K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P011e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-38ethylene responsive element binding factor 5